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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Manny Mejia | 28th | John Cain | Tied for 8th | 28th |
| First Basemen | Justin Bellmann | 4th | Ruben Sanchez | 29th | 5th |
| Second Basemen | Bobby Zaragosa | 2nd | Ben MacDonald | 25th | 2nd |
| Third Basemen | Tony Avance | 5th | Gregorio Jimenez | 21st | 5th |
| Shortstops | Antonio Contreras | 19th | Tim Carrasco | 31st | 23rd |
| Left Fielders | Jason Budgell | 15th | Chris Pommer | 16th | 15th |
| Center Fielders | Carlos Vasquez | 8th | Paul Strubeck | 22nd | 8th |
| Right Fielders | Shawn Bowers | 22nd | Justin Phillips | 11th | 22nd |
| Starting Pitchers | Travis Bull | 10th | Daniel Minor | 26th | 22nd |
| Relievers | Jordan Jackson | 30th | Omar Martinez | 1st | 27th |
| Closers | Jeff Ecker | Tied for 3rd | Santos Curiel | Tied for 19th | 5th |
